Rapor Tarihi: 27.03.2026 01:41
| Course Title | Code | Language | Type | Semester | L+U Hour | Credits | ECTS |
|---|---|---|---|---|---|---|---|
| bioinformatics | BTZ406 | Turkish | Compulsory | 8. Semester | 2 + 1 | 3.0 | 2.0 |
| Prerequisite Courses | |
| Course Level | Undergraduate |
| Mode of delivery | Face to Face |
| Course Coordinator | Dr. Öğr. Üyesi Taylan ÇAKMAK |
| Instructor(s) | |
| Goals | Teaching the current molecular diagnosis and diagnostic methods used in Agricultural Biotechnology together with their applications. |
| Course Content | Fundamental Principles Regarding Bioinformatics |
| # | Öğrenme Kazanımı |
| 1 | The student learns and applies molecular techniques used to determine gene expression in plants and animals. |
| 2 | The student learns and applies fundamental laboratory methods used in DNA and protein analysis. |
| 3 | The student analyzes and interprets data obtained at gene and protein levels. |
| 4 | The student compares and evaluates results obtained through molecular biology techniques. |
| 5 | The student explains the applications of molecular screening methods in plant and animal systems. |
| Week | Topics/Applications | Method |
|---|---|---|
| 1. Week | DNA Isolation Methods from Various Plant and Animal Tissues and Polymerase Chain Reaction (PCR). | Interview, Presentation (Preparation), Practice, Lecture |
| 2. Week | PCR methods and application areas | Interview, Presentation (Preparation), Practice, Lecture |
| 3. Week | Molecular identification methods after PCR: RFLP, DGGE,TGGE, SSCP | Interview, Presentation (Preparation), Practice, Lecture |
| 4. Week | DNA Sequencing methods, Sanger DNA Sequencing method, Next Generation DNA Sequencing Method. | Interview, Presentation (Preparation), Practice, Lecture |
| 5. Week | Real-Time PCR and application areas | Interview, Presentation (Preparation), Practice, Lecture |
| 6. Week | Microarray Technologies | Interview, Presentation (Preparation), Practice, Lecture |
| 7. Week | Protein Purification Methods and Quantitation Methods from Various Plant and Animal Tissues | Interview, Presentation (Preparation), Practice, Lecture |
| 8. Week | Protein Purification Methods and Quantitation Methods from Various Plant and Animal Tissues | Interview, Presentation (Preparation), Practice, Lecture |
| 9. Week | Protein Electrophoresis methods | Interview, Presentation (Preparation), Practice, Lecture |
| 10. Week | Western Blotting | Interview, Presentation (Preparation), Practice, Lecture |
| 11. Week | Protein Chips | Interview, Presentation (Preparation), Practice, Lecture |
| 12. Week | IUD, Elisa and Immunoprecipitation | Interview, Presentation (Preparation), Practice, Lecture |
| 13. Week | Hybridoma Technologies | Interview, Presentation (Preparation), Practice, Lecture |
| 14. Week | Hybridoma Technologies. | Interview, Presentation (Preparation), Practice, Lecture |
| No | Program Requirements | Level of Contribution | |||||
|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | |||
| 1 | .Applies knowledge of natural sciences and mathematics to the development of various processes within the field. | ✔ | |||||
| 2 | Acts in accordance with ethical and deontological principles in decision-making and implementation processes. | ✔ | |||||
| 3 | Utilizes scientific and technological developments in field-related applications. | ✔ | |||||
| 4 | Solves engineering problems within the field through an analytical approach by integrating fundamental engineering knowledge with technical tools. | ✔ | |||||
| 5 | Designs all technical systems, system components, and production processes related to the field. | ✔ | |||||
| 6 | Implements crop and livestock production processes in accordance with scientific and technical principles. | ✔ | |||||
| 7 | Utilizes data-driven core technologies within the agricultural sector in production processes. | ✔ | |||||
| 8 | Applies sustainability principles and approaches to agricultural processes. | ✔ | |||||
| 9 | Utilizes managerial and institutional knowledge for agriculture, taking into account global and local developments. | ✔ | |||||
| 10 | Integrates fundamental scientific knowledge in the fields of genetics, molecular biology, microbiology, and biochemistry into agricultural biotechnology processes through a critical approach. | ✔ | |||||
| 11 | Produces innovative and sustainable biotechnological solutions to agricultural problems by effectively utilizing laboratory and field applications. | ✔ | |||||
| 12 | Effectively utilizes statistical, mathematical, and bioinformatic tools to analyze biological data. | ✔ | |||||
| 13 | Fulfills professional and social responsibilities by mastering the ethical, legal, intellectual property, and biosafety dimensions of biotechnological applications. | ✔ | |||||
| 14 | Effectively shares project findings obtained by working efficiently in interdisciplinary projects using effective presentation techniques. | ✔ | |||||
| 15 | Demonstrates lifelong learning and entrepreneurship skills by generating innovative ideas and continuously following scientific and technological developments in the field. | ✔ | |||||
| Program Requirements | DK1 | DK2 | DK3 | DK4 | DK5 |
|---|---|---|---|---|---|
| PY1 | 5 | 5 | 5 | 5 | 5 |
| PY2 | 4 | 4 | 4 | 4 | 4 |
| PY3 | 5 | 5 | 5 | 5 | 5 |
| PY4 | 3 | 3 | 3 | 3 | 3 |
| PY5 | 4 | 4 | 4 | 4 | 4 |
| PY6 | 3 | 3 | 3 | 3 | 3 |
| PY7 | 4 | 4 | 4 | 4 | 4 |
| PY8 | 4 | 4 | 4 | 4 | 4 |
| PY9 | 1 | 1 | 1 | 1 | 1 |
| PY10 | 5 | 5 | 5 | 5 | 5 |
| PY11 | 1 | 1 | 1 | 1 | 1 |
| PY12 | 1 | 1 | 1 | 1 | 1 |
| PY13 | 1 | 1 | 1 | 1 | 1 |
| PY14 | 1 | 1 | 1 | 1 | 1 |
| PY15 | 1 | 1 | 1 | 1 | 1 |
| Ders Kitabı veya Notu | Ders Kitabı veya Ders Notu bulunmamaktadır. |
|---|---|
| Diğer Kaynaklar |
|
| ECTS credits and course workload | Quantity | Duration (Hour) | Total Workload (Hour) | |
|---|---|---|---|---|
|
Ders İçi |
Class Hours | 14 | 2 | 28 |
|
Ders Dışı |
Research | 14 | 1 | 14 |
| Other Activities | 2 | 3.5 | 7 | |
|
Sınavlar |
Midterm | 1 | 1 | 1 |
| Final | 1 | 1 | 1 | |
| Total Workload | 51 | |||
| *AKTS = (Total Workload) / 25,5 | ECTS Credit of the Course | 2.0 | ||
